Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs114120608 | chr3:67887796 | A/G | 0.000316 | 482 | 15.47 | 17.62 | 19.7 | KM Plot |
| THCA | rs114153054 | chr19:43572440 | A/T | 0.000246 | 486 | 15.32 | 18.93 | 10.08 | KM Plot |
| THCA | rs114194299 | chr19:43585476 | A/T | 0.000256 | 485 | 15.32 | 18.3 | 10.08 | KM Plot |
| THCA | rs114206025 | chr1:91798074 | G/A | 7.73E-6 | 490 | 15.67 | 17 | 17.77 | KM Plot |
| THCA | rs114209565 | chr7:43959518 | G/T | 5.14E-5 | 473 | 16.07 | 14.9 | 17.03 | KM Plot |
| THCA | rs114209632 | chr3:52188361 | C/T | 8.21E-5 | 483 | 16.07 | 14.8 | 17.72 | KM Plot |
| THCA | rs114227465 | chr5:96309102 | A/G | 3.52E-6 | 486 | 15.83 | 17.03 | 17.7 | KM Plot |
| THCA | rs114228336 | chr5:96209904 | G/T | 4.9E-10 | 485 | 15.17 | 20.43 | 20.6 | KM Plot |
| THCA | rs114252282 | chr13:24890050 | G/A | 0.000172 | 476 | 15.17 | 17.77 | 17.08 | KM Plot |
| THCA | rs114371878 | chr1:91723685 | A/T | 8.32E-6 | 483 | 15.9 | 16.97 | 17.77 | KM Plot |
| THCA | rs114406995 | chr3:19950526 | G/T | 5.19E-7 | 479 | 15.83 | 16.92 | 11.52 | KM Plot |
| THCA | rs114424613 | chr5:96250585 | A/G | 3.27E-6 | 489 | 15.83 | 16.92 | 17.7 | KM Plot |
| THCA | rs11445574 | chr4:3212336 | T/TG | 4.85E-5 | 472 | 16.73 | 14.63 | 14.3 | KM Plot |
| THCA | rs114520005 | chr1:91857369 | C/T | 7.72E-6 | 490 | 15.67 | 16.68 | 17.77 | KM Plot |
| THCA | rs114546495 | chr4:1374787 | G/A | 1.66E-7 | 485 | 16.13 | 15.22 | 1.13 | KM Plot |